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Sef1, rapid-cycling Brassica napus for large-scale functional genome research in a controlled environment.

Xiaofang XieYanhua JiangWenqi XuWeiguang YangWeixia LeiDuo QianJie GaoFangfang CaiDongliang YuLiping KeZhixiong Fan
Published in: TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik (2023)
population of Sef1 and Zhongshuang11, bulked segregant analysis (BSA) combined with the rape Bnapus50K SNP chip assay method was used to identify the early-flowering genes in Sef1, and a mutation in BnaFT.A02 was identified as a major locus significantly affecting the flowering time in Sef1. To further investigate the mechanism of early flowering in Sef1 and discover its potential in gene function analysis, an efficient Agrobacterium-mediated transformation system was established. The average transformation efficiency with explants of hypocotyls and cotyledons was 20.37% and 12.8%, respectively, and the entire transformation process took approximately 3 months from explant preparation to seed harvest of transformed plants. This study demonstrates the great potential of Sef1 for large-scale functional gene analysis.
Keyphrases
  • genome wide
  • arabidopsis thaliana
  • high throughput
  • copy number
  • high resolution
  • dna methylation
  • risk assessment
  • mass spectrometry
  • single cell
  • circulating tumor cells
  • high density