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Development and Validation of Risk Prediction Models for Colorectal Cancer in Patients with Symptoms.

Wei XuInes Mesa-EguiagarayTheresa KirkpatrickJennifer DevlinStephanie BroganPatricia TurnerChloe MacdonaldMichelle ThorntonXiaomeng ZhangYazhou HeXue LiMaria TimofeevaSusan M FarringtonFarhat DinMalcolm DunlopEvropi Theodoratou
Published in: Journal of personalized medicine (2023)
We aimed to develop and validate prediction models incorporating demographics, clinical features, and a weighted genetic risk score (wGRS) for individual prediction of colorectal cancer (CRC) risk in patients with gastroenterological symptoms. Prediction models were developed with internal validation [CRC Cases: n = 1686/Controls: n = 963]. Candidate predictors included age, sex, BMI, wGRS, family history, and symptoms (changes in bowel habits, rectal bleeding, weight loss, anaemia, abdominal pain). The baseline model included all the non-genetic predictors. Models A (baseline model + wGRS) and B (baseline model) were developed based on LASSO regression to select predictors. Models C (baseline model + wGRS) and D (baseline model) were built using all variables. Models' calibration and discrimination were evaluated through the Hosmer-Lemeshow test (calibration curves were plotted) and C-statistics (corrected based on 1000 bootstrapping). The models' prediction performance was: model A (corrected C-statistic = 0.765); model B (corrected C-statistic = 0.753); model C (corrected C-statistic = 0.764); and model D (corrected C-statistic = 0.752). Models A and C, that integrated wGRS with demographic and clinical predictors, had a statistically significant improved prediction performance. Our findings suggest that future application of genetic predictors holds significant promise, which could enhance CRC risk prediction. Therefore, further investigation through model external validation and clinical impact is merited.
Keyphrases
  • weight loss
  • magnetic resonance imaging
  • body mass index
  • gene expression
  • machine learning
  • genome wide
  • artificial intelligence
  • depressive symptoms
  • atrial fibrillation
  • copy number
  • deep learning
  • sleep quality