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Microsolvation of the pyrrole cation (Py+) with nonpolar and polar ligands: infrared spectra of Py+-Ln with L = Ar, N2, and H2O (n ≤ 3).

Markus SchützYoshiteru MatsumotoAude BouchetMurat ÖztürkOtto Dopfer
Published in: Physical chemistry chemical physics : PCCP (2018)
The solvation of aromatic (bio-)molecular building blocks has a strong impact on the intermolecular interactions and function of supramolecular assemblies, proteins, and DNA. Herein we characterize the initial microsolvation process of the heterocyclic aromatic pyrrole cation (Py+) in its 2A2 ground electronic state with nonpolar, quadrupolar, and dipolar ligands (L = Ar, N2, and H2O) by infrared photodissociation (IRPD) spectroscopy of cold mass-selected Py+-Ln (n ≤ 3) clusters in a molecular beam and dispersion-corrected density functional theory calculations at the B3LYP-D3/aug-cc-pVTZ level. Size- and isomer-specific shifts in the NH stretch frequency (ΔνNH) unravel the competition between various ligand binding sites, the strength of the respective intermolecular bonds, and the cluster growth. In Py+-Ar, linear H-bonding of Ar to the acidic NH group (NHAr) is competitive with π-stacking to the aromatic ring, and both Py+-Ar(H) and Py+-Ar(π) are observed. For L = N2 and H2O, the linear NHL H-bond is much more stable than any other binding site and the only observed binding motif. For the Py+-Ar2 and Py+-(N2)2 trimers, the H/π isomer with one H-bonded and one π-bonded ligand strongly competes with a 2H isomer with two bifurcated nonlinear NHL bonds. The latter are equivalent for Ar but nonequivalent for N2. Py+-H2O exhibits a strong and linear NHO H-bond with charge-dipole configuration and C2v symmetry. IRPD spectra of cold Py+-H2O-L clusters with L = Ar and N2 reveal that Ar prefers π-stacking to the Py+ ring, while N2 forms an OHN2 H-bond to the H2O ligand. The ΔνNH frequency shifts in Py+-Ln are correlated with the strength of the NHL H-bond and the proton affinity (PA) of L, and a monotonic correlation between ΔνNH of the Py+-L(H) dimers and PA is established. Comparison with neutral Py-L dimers reveals the strong impact of the positive charge on the acidity of the NH group, the strength of the NHL H-bond, and the preferred ligand binding motif.
Keyphrases
  • density functional theory
  • molecular dynamics
  • ionic liquid
  • gene expression
  • genome wide
  • mass spectrometry
  • dna methylation
  • binding protein