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Engineering DszC Mutants from Transition State Macrodipole Considerations and Evolutionary Sequence Analysis.

Rui P P NevesMaria João RamosPedro Alexandrino Fernandes
Published in: Journal of chemical information and modeling (2022)
We describe an approach to identify enzyme mutants with increased turnover using the enzyme DszC as a case study. Our approach is based on recalculating the barriers of alanine mutants through single-point energy calculations at the hybrid QM/MM level in the wild-type reactant and transition state geometries. We analyze the difference in the electron density between the reactant and transition state to identify sites/residues where electrostatic interactions stabilize the transition state over the reactants. We also assess the insertion of a unit probe charge to identify positions in which the introduction of charged residues lowers the barrier.
Keyphrases
  • wild type
  • molecular dynamics simulations
  • molecular dynamics
  • genome wide
  • bone mineral density
  • dna methylation
  • solar cells
  • amino acid