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TopIso3D Viewer : Enhancing Topological Analysis through 3D Isosurfaces.

Jeronimo F SilvaGuilherme S L FabrisJulio Ricardo SambranoAnderson R AlbuquerqueAry S Maia
Published in: Journal of chemical information and modeling (2023)
We present TopIso3D Viewer , a software with a user-friendly graphical interface, that generates three-dimensional maps to analyze descriptors based on the Quantum Theory of Atoms in Molecules (QTAIM), applied in periodic and nonperiodic systems. The software also automates the launching of topological analysis calculations through the Topond package and generates a report that facilitates the identification of the values of the calculated descriptors, in the Bond Critical Points (BCP) and Critical Points of the Laplacian of the electron density (LCP), facilitating the classification of chemical interactions. The map projects created can be stored in the form of HTML files, for later consultation through any type of browser. For validation of the software, several systems with 0-3D dimensions were studied. In addition, the topology of urea molecular crystal and its isolated molecule were revisited.
Keyphrases
  • machine learning
  • data analysis
  • molecular dynamics
  • palliative care
  • deep learning
  • quality improvement
  • single molecule
  • solid state
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