Perinatal granulopoiesis and risk of pediatric asthma.
Benjamin A TurturiceJuliana TheorellMary Dawn KoenigLisa Tussing-HumphreysDiane R GoldAugusto A LitonjuaEmily OkenSheryl L Rifas-ShimanDavid L PerkinsPatricia W FinnPublished in: eLife (2021)
There are perinatal characteristics, such as gestational age, reproducibly associated with the risk for pediatric asthma. Identification of biologic processes influenced by these characteristics could facilitate risk stratification or new therapeutic targets. We hypothesized that transcriptional changes associated with multiple epidemiologic risk factors would be mediators of pediatric asthma risk. Using publicly available transcriptomic data from cord blood mononuclear cells, transcription of genes involved in myeloid differentiation was observed to be inversely associated with a pediatric asthma risk stratification based on multiple perinatal risk factors. This gene signature was validated in an independent prospective cohort and was specifically associated with genes localizing to neutrophil-specific granules. Further validation demonstrated that umbilical cord blood serum concentration of PGLYRP-1, a specific granule protein, was inversely associated with mid-childhood current asthma and early-teen FEV1/FVCx100. Thus, neutrophil-specific granule abundance at birth predicts risk for pediatric asthma and pulmonary function in adolescence.
Keyphrases
- chronic obstructive pulmonary disease
- lung function
- risk factors
- allergic rhinitis
- gestational age
- cord blood
- umbilical cord
- mesenchymal stem cells
- pregnant women
- rheumatoid arthritis
- gene expression
- bone marrow
- induced apoptosis
- cystic fibrosis
- dendritic cells
- small molecule
- childhood cancer
- young adults
- body mass index
- dna methylation
- machine learning
- immune response
- peripheral blood
- amino acid
- signaling pathway
- cell cycle arrest
- deep learning
- microbial community
- rna seq
- protein protein