1k-RiCA (1K-Rice Custom Amplicon) a novel genotyping amplicon-based SNP assay for genetics and breeding applications in rice.

Juan David ArbelaezMaria Stefanie DwiyantiErwin TandayuKrizzel LlantadaAnnalhea JaranaJohn Carlos IgnacioJohn Damien PlattenJoshua CobbJessica Elaine RutkoskiMichael J ThomsonTobias Kretzschmar

Published in: Rice (New York, N.Y.) (2019)

This study validated the marker quality and robustness of the 1k-RiCA genotypic platform for genotyping populations derived from indica rice subpopulation for genetic and breeding purposes including MAS and genomic selection. The 1k-RiCA has proven to be an alternative cost-effective genotyping system for breeding applications.

Keyphrases

genome wide
high throughput
genetic diversity
copy number
dna methylation
single cell
gene expression