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Prediction and characterization of promoters and ribosomal binding sites of Zymomonas mobilis in system biology era.

Yongfu YangWei ShenJu HuangRunxia LiYubei XiaoHui WeiYat-Chen ChouMin ZhangMichael E HimmelShouwen ChenLi YiLixin MaShihui Yang
Published in: Biotechnology for biofuels (2019)
This study not only identified and characterized 38 promoters and four RBSs with different strengths for future metabolic engineering in Z. mobilis, but also established a flow cytometry-based dual reporter-gene system to characterize genetic elements including, but not limited to the promoters and RBSs studied in this work. This study also suggested the feasibility of predicting and selecting candidate genetic elements based on omics datasets and bioinformatics tools. Moreover, the dual reporter-gene system developed in this study can be utilized to characterize other genetic elements of Z. mobilis, which can also be applied to other microorganisms.
Keyphrases
  • genome wide
  • flow cytometry
  • crispr cas
  • gene expression
  • dna methylation