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Unified Cox model based multifactor dimensionality reduction method for gene-gene interaction analysis of the survival phenotype.

SeungYeoun LeeDonghee SonYongkang KimWenbao YuTaesung Park
Published in: BioData mining (2018)
Cox UM-MDR is easily implemented by combining Cox-MDR with UM-MDR to detect the significant gene-gene interactions associated with the survival time without cross-validation and permutation testing. The simulation results are shown to demonstrate the utility of the proposed method, which achieves at least the same power as Cox-MDR in most scenarios, and outperforms Cox-MDR when some SNPs having only marginal effects might mask the detection of the causal epistasis.
Keyphrases
  • multidrug resistant
  • genome wide
  • copy number
  • climate change
  • obstructive sleep apnea
  • genome wide analysis
  • quantum dots
  • sensitive detection