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Cave beetle lineages gained genes before going down under: An example of repeated genomic exaptation?

Markus Friedrich
Published in: Journal of experimental zoology. Part B, Molecular and developmental evolution (2024)
The adaptation of animals to subterranean habitats like caves and aquifers stereotypically leads to dramatic trait-loss consequences like the lack of eyes and body pigmentation. These body plan regression trends are expected to be tied to gene loss as well. Indeed, previous studies documented the degeneration of vision genes in obligate cave dwellers. Contradicting this picture, the first broad-scale comparative transcriptome-wide study of gene content evolution in separate subterranean Australian and Mediterranean beetle clades unearthed evidence of global gene gain and retention. This suggests that the transition to cave life may be more contingent on gene repertoire expansion than contraction. Future studies, however, will need to examine how much the observed patterns of gene content evolution reflect subfunctionalization and fitness-securing genetic redundancy outcomes following gene duplication as opposed to adaptive trajectories.
Keyphrases
  • genome wide
  • copy number
  • genome wide identification
  • dna methylation
  • genome wide analysis
  • physical activity
  • optical coherence tomography
  • current status
  • smooth muscle