Gene network-based and ensemble modeling-based selection of tumor-associated antigens with a predicted low risk of tissue damage for targeted immunotherapy.
Christopher LischerMartin EberhardtCindy FlamannJohannes BergesEsther GüseAnja WesselyAdrian WeichJimmy RetzlaffJan DörrieNiels SchaftManuel WiesingerJohannes MärzBeatrice Schuler-ThurnerHarald KnorrShailendra GuptaKrishna Pal SinghGerold SchulerMarkus Vincent HepptElias Andreas Thomas KochNadine D van KleefJulian J Freen-van HeerenAnnelies W TurksmaOlaf WolkenhauerBettina HohbergerCarola BerkingHeiko BrunsJulio VeraPublished in: Journal for immunotherapy of cancer (2024)
In this study, we demonstrate the feasibility of the de novo computational selection of antigens with the capacity to induce an anti-tumor immune response and a predicted low risk of tissue damage. On translation to the clinic, our pipeline supports fast turn-around validation, for example, for adoptive T-cell transfer preparations, in both generalized and personalized antigen-directed immunotherapy settings.