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Molecular Basis for ADP-Ribose Binding to the Mac1 Domain of SARS-CoV-2 nsp3.

David N FrickRajdeep S VirdiNemanja VuksanovicNarayan DahalNicholas R Silvaggi
Published in: Biochemistry (2020)
The virus that causes COVID-19, SARS-CoV-2, has a large RNA genome that encodes numerous proteins that might be targets for antiviral drugs. Some of these proteins, such as the RNA-dependent RNA polymerase, helicase, and main protease, are well conserved between SARS-CoV-2 and the original SARS virus, but several others are not. This study examines one of the proteins encoded by SARS-CoV-2 that is most different, a macrodomain of nonstructural protein 3 (nsp3). Although 26% of the amino acids in this SARS-CoV-2 macrodomain differ from those observed in other coronaviruses, biochemical and structural data reveal that the protein retains the ability to bind ADP-ribose, which is an important characteristic of beta coronaviruses and a potential therapeutic target.
Keyphrases
  • sars cov
  • respiratory syndrome coronavirus
  • amino acid
  • genome wide
  • transcription factor
  • machine learning
  • protein protein
  • binding protein
  • risk assessment
  • climate change
  • artificial intelligence