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Dynamic Structural Changes and Thermodynamics in Phase Separation Processes of an Intrinsically Disordered-Ordered Protein Model.

Steffen LüdekePhilipp LohnerLara G StühnMartin U BetschartMatthias C HuberAndreas SchreiberStefan M Schiller
Published in: Angewandte Chemie (International ed. in English) (2021)
Elastin-like proteins (ELPs) are biologically important proteins and models for intrinsically disordered proteins (IDPs) and dynamic structural transitions associated with coacervates and liquid-liquid phase transitions. However, the conformational status below and above coacervation temperature and its role in the phase separation process is still elusive. Employing matrix least-squares global Boltzmann fitting of the circular dichroism spectra of the ELPs (VPGVG)20 , (VPGVG)40 , and (VPGVG)60 , we found that coacervation occurs sharply when a certain number of repeat units has acquired β-turn conformation (in our sequence setting a threshold of approx. 20 repeat units). The character of the differential scattering of the coacervate suspensions indicated that this fraction of β-turn structure is still retained after polypeptide assembly. Such conformational thresholds may also have a role in other protein assembly processes with implications for the design of protein-based smart materials.
Keyphrases
  • molecular dynamics simulations
  • amino acid
  • protein protein
  • molecular dynamics
  • single molecule
  • fluorescent probe
  • binding protein
  • sensitive detection
  • living cells
  • quantum dots