The MAGMA pipeline for comprehensive genomic analyses of clinical Mycobacterium tuberculosis samples.

Tim H Heupink Lennert Verboven Abhinav Sharma Vincent RennieMiguel de Diego FuertesRobin M WarrenAnnelies Van Rie

Published in: PLoS computational biology (2023)

The MAGMA pipeline could facilitate the integration of WGS into clinical care as it generates clinically relevant data on drug resistance and phylogeny in an automated, standardized, and reproducible manner.

Keyphrases

mycobacterium tuberculosis
healthcare
palliative care
gene expression
dna methylation
pain management