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Limits of economy and fidelity for programmable assembly of size-controlled triply periodic polyhedra.

Carlos M DuqueDouglas M HallBotond TyukodiMichael Francis HaganChristian D SantangeloGregory M Grason
Published in: Proceedings of the National Academy of Sciences of the United States of America (2024)
We propose and investigate an extension of the Caspar-Klug symmetry principles for viral capsid assembly to the programmable assembly of size-controlled triply periodic polyhedra, discrete variants of the Primitive, Diamond, and Gyroid cubic minimal surfaces. Inspired by a recent class of programmable DNA origami colloids, we demonstrate that the economy of design in these crystalline assemblies-in terms of the growth of the number of distinct particle species required with the increased size-scale (e.g., periodicity)-is comparable to viral shells. We further test the role of geometric specificity in these assemblies via dynamical assembly simulations, which show that conditions for simultaneously efficient and high-fidelity assembly require an intermediate degree of flexibility of local angles and lengths in programmed assembly. Off-target misassembly occurs via incorporation of a variant of disclination defects, generalized to the case of hyperbolic crystals. The possibility of these topological defects is a direct consequence of the very same symmetry principles that underlie the economical design, exposing a basic tradeoff between design economy and fidelity of programmable, size controlled assembly.
Keyphrases
  • gene expression
  • escherichia coli
  • dna methylation
  • molecular dynamics
  • copy number
  • room temperature
  • single molecule
  • genome wide
  • circulating tumor
  • staphylococcus aureus