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Fungi-on-a-Chip: microfluidic platforms for single-cell studies on fungi.

Felix RichterSaskia BindschedlerMaryline Calonne-SalmonStéphane DeclerckPilar JunierClaire E Stanley
Published in: FEMS microbiology reviews (2022)
Fungi, with their enormous diversity, bear essential roles both in nature and our everyday lives. They inhabit a range of ecosystems, such as soil, where they are involved in organic matter degradation and bioremediation processes. More recently, fungi have been recognised as key components of the microbiome in other eukaryotes, such as humans, where they play a fundamental role not only in human pathogenesis, but also likely as commensals. In the food sector, fungi are used either directly or as fermenting agents and are often key players in the biotechnological industry, where they are responsible for the production of both bulk chemicals and antibiotics. Although the macroscopic fruiting bodies are immediately recognisable by most observers, the structure, function and interactions of fungi with other microbes at the microscopic scale still remain largely hidden. Herein, we shed light on new advances in the emerging field of Fungi-on-a-Chip microfluidic technologies for single-cell studies on fungi. We discuss the development and application of microfluidic tools in the fields of medicine and biotechnology, as well as in-depth biological studies having significance for ecology and general natural processes. Finally, a future perspective is provided, highlighting new frontiers in which microfluidic technology can benefit this field.
Keyphrases
  • single cell
  • high throughput
  • circulating tumor cells
  • rna seq
  • climate change
  • induced pluripotent stem cells