LRRK2 G2019S variant is associated with transcriptional changes in Parkinson's disease human myeloid cells under proinflammatory environment.
Elisa NavarroAnastasia G EfthymiouMadison ParksGiulietta Maria RiboldiRicardo Assunção VialleEvan UdineBenjamin Z MullerJack HumphreyAmanda AllanCharlie Charalambos ArgyrouKatia de Paiva LopesAlexandra MünchDeborah RaymondRivka SachdevVicki L ShankerJoan MiraviteViktoryia KatsnelsonKatherine LeaverSteven J FruchtSusan B BressmanEdoardo MarcoraRachel Saunders-PullmanAlison Mary GoateTowfique RajPublished in: bioRxiv : the preprint server for biology (2024)
The G2019S mutation in the leucine-rich repeat kinase 2 (LRRK2) gene is a major risk factor for the development of Parkinson's disease (PD). LRRK2, although ubiquitously expressed, is highly abundant in cells of the innate immune system. Given the importance of central and peripheral immune cells in the development of PD, we sought to investigate the consequences of the G2019S mutation on microglial and monocyte transcriptome and function. We have generated large-scale transcriptomic profiles of isogenic human induced microglial cells (iMGLs) and patient derived monocytes carrying the G2019S mutation under baseline culture conditions and following exposure to the proinflammatory factors IFNγ and LPS. We demonstrate that the G2019S mutation exerts a profound impact on the transcriptomic profile of these myeloid cells, and describe corresponding functional differences in iMGLs. The G2019S mutation led to an upregulation in lipid metabolism and phagolysosomal pathway genes in untreated and LPS/IFNγ stimulated iMGLs, which was accompanied by an increased phagocytic capacity of myelin debris. We also identified dysregulation of cell cycle genes, with a downregulation of the E2F4 regulon. Transcriptomic characterization of human-derived monocytes carrying the G2019S mutation confirmed alteration in lipid metabolism associated genes. Altogether, these findings reveal the influence of G2019S on the dysregulation of the myeloid cell transcriptome under proinflammatory conditions.
Keyphrases
- induced apoptosis
- dendritic cells
- single cell
- genome wide
- endothelial cells
- cell cycle arrest
- cell cycle
- immune response
- rna seq
- cell proliferation
- inflammatory response
- acute myeloid leukemia
- signaling pathway
- bone marrow
- stem cells
- endoplasmic reticulum stress
- oxidative stress
- dna methylation
- lipopolysaccharide induced
- genome wide identification
- induced pluripotent stem cells
- peripheral blood
- long non coding rna
- diabetic rats
- bioinformatics analysis
- lps induced
- protein kinase
- heat shock protein
- chemotherapy induced