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Genome-Wide Identification of Expansin Gene Family and Their Response under Hormone Exposure in Ginkgo biloba L.

Fangyun GuoJing GuoEl-Kassaby YousryGuibin Wang
Published in: International journal of molecular sciences (2023)
Expansins are pH-dependent enzymatic proteins that irreversibly and continuously facilitate cell-wall loosening and extension. The identification and comprehensive analysis of Ginkgo biloba expansins (GbEXPs ) are still lacking. Here, we identified and investigated 46 GbEXPs in Ginkgo biloba . All GbEXPs were grouped into four subgroups based on phylogeny. GbEXPA31 was cloned and subjected to a subcellular localization assay to verify our identification. The conserved motifs, gene organization, cis-elements, and Gene Ontology (GO) annotation were predicted to better understand the functional characteristics of GbEXPs . The collinearity test indicated segmental duplication dominated the expansion of the GbEXPA subgroup, and seven paralogous pairs underwent strong positive selection during expansion. A majority of GbEXPAs were mainly expressed in developing Ginkgo kernels or fruits in transcriptome and real-time quantitative PCR (qRT-PCR). Furthermore, GbEXLA4 , GbEXLA5 , GbEXPA5 , GbEXPA6 , GbEXPA8 , and GbEXPA24 were inhibited under the exposure of abiotic stresses (UV-B and drought) and plant hormones (ABA, SA, and BR). In general, this study expanded our understanding for expansins in Ginkgo tissues' growth and development and provided a new basis for studying GbEXPs in response to exogenous phytohormones.
Keyphrases
  • genome wide identification
  • transcription factor
  • cell wall
  • genome wide
  • gene expression
  • copy number
  • clinical trial
  • high resolution
  • climate change
  • arabidopsis thaliana
  • nitric oxide
  • heat stress
  • double blind