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Abiotic Reduction of Organic and Inorganic Compounds by Fe(II)-Associated Reductants: Comprehensive Data Sets and Machine Learning Modeling.

Yidan GaoShifa ZhongKai ZhangHuichun Zhang
Published in: Environmental science & technology (2023)
Iron-associated reductants play a crucial role in providing electrons for various reductive transformations. However, developing reliable predictive tools for estimating abiotic reduction rate constants (log k ) in such systems has been impeded by the intricate nature of these systems. Our recent study developed a machine learning (ML) model based on 60 organic compounds toward one soluble Fe(II)-reductant. In this study, we built a comprehensive kinetic data set covering the reactivity of 117 organic and 10 inorganic compounds toward four major types of Fe(II)-associated reductants. Separate ML models were developed for organic and inorganic compounds, and the feature importance analysis demonstrated the significance of resonance structures, reducible functional groups, reductant descriptors, and pH in log k prediction. Mechanistic interpretation validated that the models accurately learned the impact of various factors such as aromatic substituents, complexation, bond dissociation energy, reduction potential, LUMO energy, and dominant reductant species. Finally, we found that 38% of the 850,000 compounds in the Distributed Structure-Searchable Toxicity (DSSTox) database contain at least one reducible functional group, and the log k of 285,184 compounds could be reasonably predicted using our model. Overall, the study is a significant step toward reliable predictive tools for anticipating abiotic reduction rate constants in iron-associated reductant systems.
Keyphrases
  • machine learning
  • water soluble
  • big data
  • electronic health record
  • high resolution
  • oxidative stress
  • genome wide identification
  • transcription factor
  • climate change