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Selection of microbial biomarkers with genetic algorithm and principal component analysis.

Ping ZhangNicholas P WestPin-Yen ChenMike W C ThangGareth PriceAllan W CrippsAmanda J Cox
Published in: BMC bioinformatics (2019)
The proposed algorithm overcomes the limitation of PCA for data analysis. It offers a new way to build prediction models that may improve the prediction accuracy. The variables included in the PCs that were selected by GA can be combined with flexibility for potential clinical applications. The algorithm can be useful for many biological studies where high dimensional data are collected with highly correlated variables.
Keyphrases
  • data analysis
  • machine learning
  • deep learning
  • neural network
  • pet ct
  • microbial community
  • big data
  • electronic health record
  • genome wide
  • artificial intelligence
  • risk assessment
  • dna methylation
  • climate change