octoFLU: Automated Classification for the Evolutionary Origin of Influenza A Virus Gene Sequences Detected in U.S. Swine.

Jennifer Chang Tavis K AndersonMichael A ZellerPhillip Charles Gauger Amy Vincent Baker

Published in: Microbiology resource announcements (2019)

The diversity of the 8 genes of influenza A viruses (IAV) in swine reflects introductions from nonswine hosts and subsequent antigenic drift and shift. Here, we curated a data set and present a pipeline that assigns evolutionary lineage and genetic clade to query gene segments.

Keyphrases

genome wide
dna methylation
copy number
genome wide identification
machine learning
deep learning
high throughput
electronic health record
big data
gene expression
single cell
transcription factor