Login / Signup

Allostery in Orai1 binding to calmodulin revealed from conformational thermodynamics.

Lakshmi MagantiSutapa DuttaMahua GhoshJaydeb Chakrabarti
Published in: Journal of biomolecular structure & dynamics (2018)
Here, we study microscopic mechanism of complex formation between Ca2+-bound calmodulin (holoCaM) and Orai1 that regulates Ca2+-dependent inactivation process in eukaryotic cells. We compute conformational thermodynamic changes in holoCaM with respect to complex of Orai1 bound to C-terminal domain of holoCaM using histograms of dihedral angles of the proteins over trajectories from molecular dynamics simulations. Our analysis shows that the N-terminal domain residues L4, T5, Q41, N42, T44 and E67 of holoCaM get destabilized and disordered due to Orai1 binding to C-terminal domain of calmodulin affect the N-terminal domain residues. Among these residues, polar T44, having maximum destabilization and disorder via backbone fluctuations, shows the largest change in solvent exposure. This suggests that N-terminal domain is allosterically regulated via T44 by the binding of Orai1 to the C-terminal domain.
Keyphrases
  • molecular dynamics simulations
  • protein kinase
  • molecular dynamics
  • depressive symptoms
  • molecular docking
  • ionic liquid
  • oxidative stress
  • cell death
  • dna binding