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Draft genome of Paraburkholderia caballeronis TNe-841T, a free-living, nitrogen-fixing, tomato plant-associated bacterium.

Fernando Uriel Rojas-RojasErika Yanet Tapia-GarcíaMaskit MaymonEthan HummMarcel HuntemannAlicia ClumManoj PillayKrishnaveni PalaniappanNeha VargheseNatalia MikhailovaDimitrios StamatisT B K ReddyVictor MarkowitzNatalia IvanovaNikos KyrpidesTanja WoykeNicole ShapiroAnn M HirschPaulina Estrada-de Los Santos
Published in: Standards in genomic sciences (2017)
10.1601/nm.26956 caballeronis is a plant-associated bacterium. Strain TNe-841T was isolated from the rhizosphere of tomato (Solanum lycopersicum L. var. lycopersicum) growing in Nepantla Mexico State. Initially this bacterium was found to effectively nodulate Phaseolus vulgaris L. However, from an analysis of the genome of strain TNe-841T and from repeat inoculation experiments, we found that this strain did not nodulate bean and also lacked nodulation genes, suggesting that the genes were lost. The genome consists of 7,115,141 bp with a G + C content of 67.01%. The sequence includes 6251 protein-coding genes and 87 RNA genes.
Keyphrases
  • genome wide
  • bioinformatics analysis
  • genome wide identification
  • dna methylation
  • genome wide analysis
  • microbial community
  • gene expression
  • transcription factor
  • amino acid
  • small molecule
  • light emitting