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Complete genome sequence of Enterococcus faecium strain AK_C_05 with potential characteristics applicable in livestock industry.

Hyunok DooJin Ho ChoMin Ho SongEun Sol KimSheena KimGi Beom KeumJinok KwakSriniwas PandeySumin RyuYejin ChoiJuyoun KangHyeun Bum KimJu-Hoon Lee
Published in: Journal of animal science and technology (2024)
The Enterococcus faecium ( E. faecium ) strain AK_C_05 was isolated from cheonggukjang , the Korean traditional food, collected from a local market in South Korea. In this report, we presented the complete genome sequence of E. faecium strain AK_C_05. The genome of E. faecium strain AK_C_05 genome consisted of one circular chromosome (2,691,319 bp) with a guanine + cytosine (GC) content of 38.3% and one circular plasmid (177,732 bp) with a GC content of 35.48%. The Annotation results revealed 2,827 protein-coding sequences (CDSs), 18 rRNAs, and 68 tRNA genes. It possesses genes, which encodes enzymes such as alpha-galactosidase (EC 3.2.1.22), beta-glucosidase (EC 3.2.1.21) and alpha-L-arabinofuranosidase (EC 3.2.1.55) enabling efficient utilization of carbohydrates. Based on Clusters of Orthologous Groups analysis, E. faecium strain AK_C_05 showed specialization in carbohydrate transport and metabolism indicating the ability to generate energy using a variety of carbohydrates.
Keyphrases
  • genome wide
  • health insurance
  • molecular docking
  • dna methylation
  • molecular dynamics simulations
  • gas chromatography
  • protein protein