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Controlling protein stability with SULI, a highly sensitive tag for stabilization upon light induction.

Miaowei MaoYajie QianWenyao ZhangSiyu ZhouZefeng WangXianjun ChenYi Yang
Published in: Nature communications (2023)
Optogenetics tools for precise temporal and spatial control of protein abundance are valuable in studying diverse complex biological processes. In the present study, we engineer a monomeric tag of stabilization upon light induction (SULI) for yeast and zebrafish based on a single light-oxygen-voltage domain from Neurospora crassa. Proteins of interest fused with SULI are stable upon light illumination but are readily degraded after transfer to dark conditions. SULI shows a high dynamic range and a high tolerance to fusion at different positions of the target protein. Further studies reveal that SULI-mediated degradation occurs through a lysine ubiquitination-independent proteasome pathway. We demonstrate the usefulness of SULI in controlling the cell cycle in yeast and regulating protein stability in zebrafish, respectively. Overall, our data indicate that SULI is a simple and robust tool to quantitatively and spatiotemporally modulate protein levels for biotechnological or biomedical applications.
Keyphrases
  • cell cycle
  • amino acid
  • protein protein
  • binding protein
  • cell proliferation
  • machine learning
  • genome wide
  • high resolution
  • small molecule
  • gene expression
  • artificial intelligence
  • data analysis
  • tandem mass spectrometry