Transcriptome Analysis of Thiram-Treated Zebrafish ( Danio rerio ) Embryos Reveals Disruption of Reproduction Signaling Pathways.
Bala Murali Krishna VasamsettiKyongmi ChonJi-Yeong ChoiJuyeong KimChang-Young YoonPublished in: Biology (2023)
Thiram, a dithiocarbamate fungicide, is used for the treatment of various fungal infections affecting crops and ornamentals. However, thiram-associated toxicity has been reported in animals, including fish, and the underlying molecular mechanisms are unclear. Herein, we employed zebrafish (ZF) to gain further insights into thiram toxicity-associated molecular mechanisms. We studied developmental abnormalities and performed whole-transcriptome analysis of ZF embryos exposed to thiram for 96 h. Embryos exposed to 4.0 μg/L thiram exhibited several phenotypic abnormalities, including bradycardia, spinal curvature, hatching arrest, and growth retardation. Whole-transcriptome analysis revealed 1754 differentially expressed genes (DEGs), with 512 upregulated and 1242 downregulated DEGs. The majority of biological processes affected by thiram were metabolic. Kyoto Encyclopedia of Genes and Genomes pathway enrichment analysis yielded terms related to reproduction, such as steroid biosynthesis and steroid hormone biosynthesis. Quantitative real-time polymerase chain reaction validation results were in line with sequencing data for ten DEGs. The study results improve our current understanding of the effects of thiram exposure in ZF.
Keyphrases
- genome wide
- oxidative stress
- spinal cord
- signaling pathway
- gene expression
- high resolution
- cell cycle
- cell proliferation
- spinal cord injury
- epithelial mesenchymal transition
- machine learning
- mass spectrometry
- dna methylation
- transcription factor
- deep learning
- drug induced
- big data
- replacement therapy
- bioinformatics analysis
- smoking cessation