How accurate is automated gap filling of metabolic models?
Peter D KarpDaniel WeaverMario LatendressePublished in: BMC systems biology (2018)
Our conclusion is that manual curation of gap-filler results is needed to obtain high-accuracy models. Many of the differences between the manual and automatic solutions resulted from using expert biological knowledge to direct the choice of reactions within the curated solution, such as reactions specific to the anaerobic lifestyle of B. longum.