Evaluating single-cell cluster stability using the Jaccard similarity index.

Brandon L LogemanYasin KaymazBrandon L LogemanStephen EichhornZhengzheng S LiangCatherine DulacTimothy B Sackton

Published in: Bioinformatics (Oxford, England) (2021)

R package scclusteval: https://github.com/crazyhottommy/scclusteval Snakemake workflow: https://github.com/crazyhottommy/pyflow_seuratv3_parameter Tutorial: https://crazyhottommy.github.io/EvaluateSingleCellClustering/.

Keyphrases

single cell
rna seq
high throughput
electronic health record