Conserved transcription factors promote cell fate stability and restrict reprogramming potential in differentiated cells.
Maria A MissinatoSean MurphyMichaela LynottMichael S YuAnaïs KervadecYu-Ling ChangSuraj KannanMafalda LoretiChristopher LeePrashila AmatyaHiroshi TanakaChun-Teng HuangPier Lorenzo PuriChulan KwonPeter D AdamsLi QianAlessandra SaccoPeter AndersenAlexandre R ColasPublished in: Nature communications (2023)
Defining the mechanisms safeguarding cell fate identity in differentiated cells is crucial to improve 1) - our understanding of how differentiation is maintained in healthy tissues or altered in a disease state, and 2) - our ability to use cell fate reprogramming for regenerative purposes. Here, using a genome-wide transcription factor screen followed by validation steps in a variety of reprogramming assays (cardiac, neural and iPSC in fibroblasts and endothelial cells), we identified a set of four transcription factors (ATF7IP, JUNB, SP7, and ZNF207 [AJSZ]) that robustly opposes cell fate reprogramming in both lineage and cell type independent manners. Mechanistically, our integrated multi-omics approach (ChIP, ATAC and RNA-seq) revealed that AJSZ oppose cell fate reprogramming by 1) - maintaining chromatin enriched for reprogramming TF motifs in a closed state and 2) - downregulating genes required for reprogramming. Finally, KD of AJSZ in combination with MGT overexpression, significantly reduced scar size and improved heart function by 50%, as compared to MGT alone post-myocardial infarction. Collectively, our study suggests that inhibition of barrier to reprogramming mechanisms represents a promising therapeutic avenue to improve adult organ function post-injury.
Keyphrases
- cell fate
- transcription factor
- genome wide
- rna seq
- single cell
- induced apoptosis
- endothelial cells
- stem cells
- high throughput
- gene expression
- heart failure
- genome wide identification
- dna methylation
- cell proliferation
- left ventricular
- climate change
- mesenchymal stem cells
- signaling pathway
- dna damage
- cell death
- bone marrow
- cell therapy