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Comparative cation sensing properties of a newly designed urea linked ferrocene-benzimidazole dyad: a DFT study.

Kübra SarikavakGülbin KurtayFatma Sevin
Published in: Journal of molecular modeling (2020)
Herein, our primary motivation was to elucidate the electronic and physicochemical properties of a novel molecular dyad consisting of ferrocene (Fc; electron donor), urea (u; linker), and amphoteric benzimidazole (BI; electron acceptor) entities. The sensor responses were investigated for various divalent transition metal cations (Mn2+, Fe2+, Co2+, Ni2+, Cu2+, and Zn2+) and the selectivity of this cationophore molecule (Fc-u-BI) to copper ion (Cu2+) was demonstrated by using B3LYP/LANL2DZ method. According to the thermochemical calculations, we justified that Fc-u-BI⋯Cu2+ reached to the lowest binding energy (∆E), enthalpy (∆H), and Gibbs free energy (∆G) changes. In the light of the calculated global descriptors, Fc-u-BI⋯Cu2+ was found to be the softer and thus the most reactive complex. The complex stabilities and their corresponding non-covalent interactions were also investigated by NBO and NCI analyses, respectively. The mechanistic insight into metal cation sensing by the modeled cationophore dyad.
Keyphrases
  • metal organic framework
  • transition metal
  • aqueous solution
  • molecular docking
  • ionic liquid
  • density functional theory
  • solar cells
  • molecular dynamics simulations
  • single molecule
  • high resolution