PAPerFly: Partial Assembly-based Peak Finder for ab initio binding site reconstruction.

Published in: BMC bioinformatics (2023)

We show that PAPerFly, an algorithm tailored for experiment analysis without the reference genome, yields better results than an aggregation of ChIP-seq agnostic tools. Our tool is freely available at https://github.com/Caeph/paperfly/ or on Zenodo ( https://doi.org/10.5281/zenodo.7116424 ).

Keyphrases

genome wide
machine learning
single cell
high throughput
rna seq
deep learning
dna methylation
neural network