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Probing the Role of Glycol Chain Lengths in π-Donor-Acceptor [2]Pseudorotaxanes Based on Monopyrrolo-Tetrathiafulvalene and Cyclobis(paraquat-p-phenylene).

Rikke KristensenSissel S AndersenGunnar OlsenJan O Jeppesen
Published in: The Journal of organic chemistry (2017)
We have investigated and quantified the role that the glycol chain length has on the strength of the noncovalent bonding interactions taking place between cyclobis(paraquat-p-phenylene) (CBPQT4+) and five different monopyrrolo-tetrathiafulvalene (MPTTF) derivatives that only differ in the length of the N-substituted glycol chain. The MPTTF derivatives were used to form [2]pseudorotaxanes by mixing them with CBPQT4+. The binding constants (Ka) associated with the complexation process leading to the formation of the [2]pseudorotaxanes were obtained using the UV-vis-NIR dilution method and the [2]pseudorotaxanes were characterized structurally using 1H NMR spectroscopy. These experimental investigations clearly indicate that the glycol chains provide additional stability to the [2]pseudorotaxanes findings that were further supported by density functional theory (DFT) studies. The DFT calculated superstructure of the [2]pseudorotaxane 3⊂CBPQT4+ reveal that [C-H···O] hydrogen bonding interactions between the acidic α-H protons in CBPQT4+ and the oxygen atoms present in the glycol chain can take place on the exterior of the [2]pseudorotaxane. However, the length of the glycol chain is of paramount importance and the present studies show that the first and second oxygen atom in the [2]pseudorotaxanes 2-5⊂CBPQT4+ are engaged in [C-H···O] hydrogen bonding interactions with CBPQT4+, whereas the third and fourth oxygen atoms are not.
Keyphrases
  • density functional theory
  • molecular dynamics
  • molecular docking
  • ionic liquid
  • dna methylation
  • genome wide
  • single molecule
  • liquid chromatography tandem mass spectrometry
  • liquid chromatography