Nanopore basecalling from a perspective of instance segmentation.

Yao-Zhong ZhangArda AkdemirGeorg TremmelSeiya ImotoSatoru MiyanoTetsuo ShibuyaRui Yamaguchi

Published in: BMC bioinformatics (2020)

Our results show that formulating the basecalling problem as a one-dimensional segmentation task is a promising approach, which does basecalling and segmentation jointly.

Keyphrases

deep learning
convolutional neural network
single molecule
machine learning
solid state