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Ioncopy: an R Shiny app to call copy number alterations in targeted NGS data.

Jan BudcziesNicole PfarrEva RomanovskyVolker EndrisAlbrecht StenzingerCarsten Denkert
Published in: BMC bioinformatics (2018)
Ioncopy facilitates calling of CNAs in a cohort of tumors tissues with or without using normal (germline) DNA controls.
Keyphrases
  • copy number
  • mitochondrial dna
  • circulating tumor
  • genome wide
  • electronic health record
  • gene expression
  • cell free
  • dna methylation
  • single molecule
  • cancer therapy
  • dna repair
  • big data
  • drug delivery