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Metabolomic profiling of dengue infection: unraveling molecular signatures by LC-MS/MS and machine learning models.

Jhansi Venkata Nagamani JosyulaAashika Raagavi JeanPierreSachin B JorvekarDeepthi AdlaVignesh MariappanSai Sharanya PulimamidiSiva Ranganathan GreenAgiesh Kumar Balakrishna PillaiRoshan M BorkarSrinivasa Rao Mutheneni
Published in: Metabolomics : Official journal of the Metabolomic Society (2024)
A total of 423 metabolites were identified in all the study groups. Paired and unpaired t-tests revealed 14 highly differentially expressed metabolites between and across the dengue groups, with four metabolites (shikimic acid, ureidosuccinic acid, propionyl carnitine, and alpha-tocopherol) showing significant differences compared to HC. Furthermore, biomarker (ROC) analysis revealed 11 potential molecules with a significant AUC value of 1 that could serve as potential biomarkers for identifying different dengue clinical stages that are beneficial for predicting dengue disease outcomes. The logistic regression model revealed that S-adenosylhomocysteine, hypotaurine, and shikimic acid metabolites could be beneficial indicators for predicting severe dengue, with an accuracy and AUC of 0.75. The data showed that dengue infection is related to lipid metabolism, oxidative stress, inflammation, metabolomic adaptation, and virus manipulation. Moreover, the biomarkers had a significant correlation with biochemical parameters like platelet count, and hematocrit. These results shed some light on host-derived small-molecule biomarkers that are associated with dengue severity and novel insights into metabolomics mechanisms interlinked with disease severity.
Keyphrases
  • zika virus
  • aedes aegypti
  • dengue virus
  • oxidative stress
  • small molecule
  • ms ms
  • machine learning
  • single cell
  • mass spectrometry
  • gene expression
  • dna damage
  • metabolic syndrome
  • skeletal muscle