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Learning-accelerated discovery of immune-tumour interactions.

Jonathan OzikNicholson CollierRandy HeilandGary C AnPaul Macklin
Published in: Molecular systems design & engineering (2019)
We present an integrated framework for enabling dynamic exploration of design spaces for cancer immunotherapies with detailed dynamical simulation models on high-performance computing resources. Our framework combines PhysiCell, an open source agent-based simulation platform for cancer and other multicellular systems, and EMEWS, an open source platform for extreme-scale model exploration. We build an agent-based model of immunosurveillance against heterogeneous tumours, which includes spatial dynamics of stochastic tumour-immune contact interactions. We implement active learning and genetic algorithms using high-performance computing workflows to adaptively sample the model parameter space and iteratively discover optimal cancer regression regions within biological and clinical constraints.
Keyphrases
  • papillary thyroid
  • squamous cell
  • high throughput
  • machine learning
  • small molecule
  • lymph node metastasis
  • childhood cancer
  • dna methylation
  • genome wide
  • young adults
  • climate change
  • density functional theory