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Challenging Structure Elucidation of Lumnitzeralactone, an Ellagic Acid Derivative from the Mangrove Lumnitzera racemosa .

Jonas KappenJeprianto ManurungTristan FuchsSahithya Phani Babu VemulapalliLea M SchmitzAndrej FrolovAndria AgustaAlexandra Nora Muellner-RiehlChristian GriesingerKatrin FrankeLudger A A Wessjohann
Published in: Marine drugs (2023)
The previously undescribed natural product lumnitzeralactone ( 1 ), which represents a derivative of ellagic acid, was isolated from the anti-bacterial extract of the Indonesian mangrove species Lumnitzera racemosa Willd. The structure of lumnitzeralactone ( 1 ), a proton-deficient and highly challenging condensed aromatic ring system, was unambiguously elucidated by extensive spectroscopic analyses involving high-resolution mass spectrometry (HRMS), 1D 1 H and 13 C nuclear magnetic resonance spectroscopy (NMR), and 2D NMR (including 1,1-ADEQUATE and 1,n-ADEQUATE). Determination of the structure was supported by computer-assisted structure elucidation (CASE system applying ACD-SE), density functional theory (DFT) calculations, and a two-step chemical synthesis. Possible biosynthetic pathways involving mangrove-associated fungi have been suggested.
Keyphrases
  • density functional theory
  • high resolution mass spectrometry
  • molecular dynamics
  • magnetic resonance
  • molecular docking
  • oxidative stress
  • solid state
  • mass spectrometry
  • molecular dynamics simulations