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ExUTR: a novel pipeline for large-scale prediction of 3'-UTR sequences from NGS data.

Zixia HuangEmma C Teeling
Published in: BMC genomics (2017)
ExUTR is a practical and powerful workflow that enables rapid genome-wide 3'-UTR discovery from NGS data. The candidates predicted through this pipeline will further advance the study of miRNA target prediction, cis elements in 3'-UTR and the evolution and biology of 3'-UTRs. Being independent of a well-annotated reference genome will dramatically expand its application to much broader research area, encompassing all species for which RNA-Seq is available.
Keyphrases
  • rna seq
  • genome wide
  • electronic health record
  • single cell
  • dna methylation
  • big data
  • small molecule
  • gene expression
  • copy number
  • machine learning
  • genetic diversity
  • deep learning
  • quantum dots