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Reanalysis of clinical exome identifies the second variant in two individuals with recessive disorders.

Qifei LiRohan AgrawalKlaus Schmitz-AbeCasie A GenettiMelissa A FernandesNoah L FryouJill A MaddenCatherine A BrownsteinEdward C SmithFarrah RajabiAlan H BeggsPankaj B Agrawal
Published in: European journal of human genetics : EJHG (2023)
Clinical exome/genome sequencing is increasingly being utilized by clinicians to diagnose various likely genetic conditions, but many cases remain undiagnosed. In a subset of those undiagnosed cases, a single heterozygous variant in an autosomal recessive (AR) condition with consistent phenotype may be identified, raising the question if a second variant is missing. Here, we report two cases of recessive conditions in which only one heterozygous variant was initially reported by clinical exome sequencing, and on research reanalysis a second heterozygous variant in trans was identified. We performed a review of the existing exome reanalysis literature and found that this aspect is often not emphasized. These findings highlight the importance of data reanalysis in undiagnosed cases where only a single disease-associated variant is identified in an AR condition with a strong link to presenting phenotype.
Keyphrases
  • copy number
  • early onset
  • genome wide
  • intellectual disability
  • palliative care
  • dna methylation