Complexation of Green and Red Kaede Fluorescent Protein Chromophores by a Zwitterion to Probe Electrostatic and Induction Field Effects.
Eleanor K AshworthMark H StockettChristina KjærPhilip C Bulman PageStephen R MeechSteen Brøndsted NielsenJames N BullPublished in: The journal of physical chemistry. A (2022)
The photophysics of green fluorescent protein (GFP) and red Kaede fluorescent protein (rKFP) are defined by the intrinsic properties of the light-absorbing chromophore and its interaction with the protein binding pocket. This work deploys photodissociation action spectroscopy to probe the absorption profiles for a series of synthetic GFP and rKFP chromophores as the bare anions and as complexes with the betaine zwitterion, which is assumed as a model for dipole microsolvation. Electronic structure calculations and energy decomposition analysis using Symmetry-Adapted Perturbation Theory are used to characterize gas-phase structures and complex cohesion forces. The calculations reveal a preponderance for coordination of betaine to the phenoxide deprotonation site predominantly through electrostatic forces. Calculations using the STEOM-DLPNO-CCSD method are able to reproduce absolute and relative vertical excitation energies for the bare anions and anion-betaine complexes. On the other hand, treatment of the betaine molecule with a point-charge model, in which the charges are computed from some common electron density population analysis schemes, show that just electrostatic and point-charge induction interactions are unable to account for the betaine-induced spectral shift. The present methodology could be applied to investigate cluster forces and optical properties in other gas-phase ion-zwitterion complexes.
Keyphrases
- molecular dynamics simulations
- living cells
- quantum dots
- density functional theory
- protein protein
- molecular dynamics
- binding protein
- ionic liquid
- amino acid
- high resolution
- fluorescent probe
- single molecule
- single cell
- small molecule
- solar cells
- mass spectrometry
- computed tomography
- label free
- transcription factor
- combination therapy
- dna binding