ViroMatch: A Computational Pipeline for the Detection of Viral Sequences from Complex Metagenomic Data.

Published in: Microbiology resource announcements (2021)

ViroMatch is an automated pipeline that takes metagenomic sequencing reads as input and performs iterative nucleotide and translated nucleotide mapping to identify viral sequences. We provide a Docker image for ViroMatch, so that users will not have to install dependencies.

Keyphrases

sars cov
antibiotic resistance genes
high resolution
deep learning
electronic health record
single cell
big data
loop mediated isothermal amplification
image quality
genetic diversity
label free
real time pcr
microbial community
mass spectrometry
wastewater treatment