FlyWire: online community for whole-brain connectomics.
Sven DorkenwaldClaire E McKellarThomas MacrinaNico KemnitzKisuk LeeRan LuJingpeng WuSergiy PopovychEric MitchellBarak NehoranZhen JiaJ Alexander BaeShang MuDodam IhManuel CastroOluwaseun OgedengbeAkhilesh HalageriKai KuehnerAmy R SterlingZoe AshwoodJonathan ZungDerrick BrittainForrest CollmanCasey Schneider-MizellChris JordanWilliam SilversmithChrista BakerDavid S DeutschLucas Encarnacion-RiveraSandeep KumarAustin BurkeDoug BlandJay GagerJames HebditchSelden KoolmanMerlin MooreSarah MorejohnBen SilvermanKyle WillieRyan WillieSzi-Chieh YuMala MurthyH Sebastian SeungPublished in: Nature methods (2021)
Due to advances in automated image acquisition and analysis, whole-brain connectomes with 100,000 or more neurons are on the horizon. Proofreading of whole-brain automated reconstructions will require many person-years of effort, due to the huge volumes of data involved. Here we present FlyWire, an online community for proofreading neural circuits in a Drosophila melanogaster brain and explain how its computational and social structures are organized to scale up to whole-brain connectomics. Browser-based three-dimensional interactive segmentation by collaborative editing of a spatially chunked supervoxel graph makes it possible to distribute proofreading to individuals located virtually anywhere in the world. Information in the edit history is programmatically accessible for a variety of uses such as estimating proofreading accuracy or building incentive systems. An open community accelerates proofreading by recruiting more participants and accelerates scientific discovery by requiring information sharing. We demonstrate how FlyWire enables circuit analysis by reconstructing and analyzing the connectome of mechanosensory neurons.
Keyphrases
- resting state
- white matter
- deep learning
- functional connectivity
- mental health
- healthcare
- machine learning
- high throughput
- health information
- spinal cord
- cerebral ischemia
- drosophila melanogaster
- social media
- crispr cas
- convolutional neural network
- multiple sclerosis
- computed tomography
- electronic health record
- mass spectrometry
- single cell
- brain injury
- image quality