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SNP4OrphanSpecies: A bioinformatics pipeline to isolate molecular markers for studying genetic diversity of orphan species.

Benjamin PenaudBenoit LaurentMarine MilhesCamille NoüsFrançois EhrenmannCyril Dutech
Published in: Biodiversity data journal (2022)
Denis & Schiffermüller, 1775). We successfully isolated several pools of one hundred short gene regions for each assembled genome, which can be amplified in multiplex. The bioinformatics pipeline is user-friendly and requires little computational resources. This easy-to-set-up and run method for genetic marker identification will be useful for numerous laboratories studying biological invasions, but with limited resources and expertise in bioinformatics.
Keyphrases
  • genetic diversity
  • genome wide
  • copy number
  • dna methylation
  • gene expression
  • single molecule
  • low cost