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BactEXTRACT: an R Shiny app to quickly extract, plot and analyse bacterial growth and gene expression data.

Julien DénéréazJan-Willem van Groenigen
Published in: Access microbiology (2024)
To streamline the analysis and visualization of bacterial growth and gene expression data obtained by microtitre plate readers, we developed BactEXTRACT, an intuitive, easy-to-use R Shiny application. BactEXTRACT simplifies the transition from raw optical density, fluorescence and luminescence measurements to publication-ready plots. This package offers a user-friendly interface that reduces the complexity involved in growth curve and gene expression analysis and is generally applicable. BactEXTRACT is available at https://veeninglab.com/bactextract.
Keyphrases
  • gene expression
  • dna methylation
  • electronic health record
  • oxidative stress
  • energy transfer
  • single molecule
  • transcription factor