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The conformational landscape of fold-switcher KaiB is tuned to the circadian rhythm timescale.

Hannah K Wayment-SteeleRenee OttenWarintra PitsawongAdedolapo OjoawoAndrew GlaserLogan A CalderoneDorothee Kern
Published in: bioRxiv : the preprint server for biology (2024)
be in the "On state". Our work exemplifies how evolution tuned the kinetics of interconversion to align with the hour-long timescale of its biological function. The Ground state is dramatically destabilized at cold temperatures, and the system contains an alternate "off" conformation that exchanges with the primary "off" conformation at faster timescales than the rate-limiting step. Furthermore, our findings demonstrate a simple principle for evolving a protein switch: one part of a protein domain remains stably folded to serve as a scaffold for the rest of the protein to re-fold.
Keyphrases
  • molecular dynamics simulations
  • protein protein
  • binding protein
  • amino acid
  • single cell