Real-world application of next-generation sequencing-based test for surgically resectable colorectal cancer in clinical practice.
Masayo OgiriRyo SeishimaKohei NakamuraEriko AimonoShimpei MatsuiKohei ShigetaTatsuyuki ChiyodaShigeki TanishimaKoji OkabayashiHiroshi NishiharaYuko KitagawaPublished in: Future oncology (London, England) (2022)
Aim: To evaluate the significance of next-generation sequencing-based gene panel testing in surgically resectable colorectal cancer by analyzing real-world data. Materials & methods: A total of 107 colorectal cancer patients who underwent curative surgery were included, and correlations between next-generation sequencing data and clinicopathological findings were evaluated. Results: More combination patterns in gene alteration were identified in advanced-stage tumors than in early-stage tumors. The copy number alteration count was significantly lower in right-sided colon tumors and early-stage tumors. Homologous recombination deficiency was more often identified in advanced-stage tumors, and high homologous recombination deficiency status was useful for identifying high-risk stage II tumors. Conclusion: Homologous recombination deficiency was identified as a useful result of gene panel testing with novel utility in clinical practice.
Keyphrases
- copy number
- mitochondrial dna
- early stage
- dna repair
- dna damage
- genome wide
- clinical practice
- dna methylation
- electronic health record
- squamous cell carcinoma
- locally advanced
- peripheral blood
- genome wide identification
- deep learning
- artificial intelligence
- percutaneous coronary intervention
- acute coronary syndrome
- transcription factor