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Spectroscopic and Structural Characterization of Reduced Desulfovibrio vulgaris Hildenborough W-FdhAB Reveals Stable Metal Coordination during Catalysis.

Ana Rita OliveiraCristiano MotaKateryna KlymanskaFrédéric BiasoMaria João RomãoBruno GuigliarelliInês Cardoso Pereira
Published in: ACS chemical biology (2022)
Metal-dependent formate dehydrogenases are important enzymes due to their activity of CO 2 reduction to formate. The tungsten-containing FdhAB formate dehydrogenase from Desulfovibrio vulgaris Hildenborough is a good example displaying high activity, simple composition, and a notable structural and catalytic robustness. Here, we report the first spectroscopic redox characterization of FdhAB metal centers by EPR. Titration with dithionite or formate leads to reduction of three [4Fe-4S] 1+ clusters, and full reduction requires Ti(III)-citrate. The redox potentials of the four [4Fe-4S] 1+ centers range between -250 and -530 mV. Two distinct W V signals were detected, W D V and W F V , which differ in only the g 2 -value. This difference can be explained by small variations in the twist angle of the two pyranopterins, as determined through DFT calculations of model compounds. The redox potential of W VI/V was determined to be -370 mV when reduced by dithionite and -340 mV when reduced by formate. The crystal structure of dithionite-reduced FdhAB was determined at high resolution (1.5 Å), revealing the same structural alterations as reported for the formate-reduced structure. These results corroborate a stable six-ligand W coordination in the catalytic intermediate W V state of FdhAB.
Keyphrases
  • high resolution
  • molecular docking
  • molecular dynamics simulations
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  • molecular dynamics
  • crystal structure
  • electron transfer
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  • tandem mass spectrometry