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STRIDE: a command-line HMM-based identifier and sub-classifier of Plasmodium falciparum RIFIN and STEVOR variant surface antigen families.

Albert E ZhouZalak V ShahKatie R BradwellJames B MunroAndrea A BerryDavid SerreShannon Takala-HarrisonTimothy D O'ConnorJoana C SilvaMark A Travassos
Published in: BMC bioinformatics (2022)
STRIDE will be beneficial to malaria research groups analyzing genome sequences and transcripts of clinical field isolates, providing insight into parasite biology and virulence.
Keyphrases
  • plasmodium falciparum
  • escherichia coli
  • pseudomonas aeruginosa
  • staphylococcus aureus
  • genetic diversity
  • antimicrobial resistance
  • biofilm formation
  • genome wide