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PlasmidSeeker: identification of known plasmids from bacterial whole genome sequencing reads.

Märt RoosaareMikk PuustusmaaMärt MölsMihkel VaherMaido Remm
Published in: PeerJ (2018)
PlasmidSeeker enables quick detection of known plasmids and complements existing tools that assemble plasmids de novo. The PlasmidSeeker source code is stored on GitHub: https://github.com/bioinfo-ut/PlasmidSeeker.
Keyphrases
  • escherichia coli
  • klebsiella pneumoniae
  • real time pcr
  • bioinformatics analysis