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Resolving sulfation PTMs on a plant peptide hormone using nanopore sequencing.

Xiuqi ChenJasper W van de SandeJustas RitmejerisChenyu WenHenry D BrinkerhoffAndrew H LaszloH Bauke AlbadaCees Dekker
Published in: bioRxiv : the preprint server for biology (2024)
Peptide phytohormones are decorated with post-translational modifications (PTMs) that are crucial for receptor recognition. Tyrosine sulfation on these hormones is essential for plant growth and development 1 . Measuring the occurrence and position of sulfotyrosine is, however, compromised by major technical challenges during isolation and detection 2 . We recently introduced a nanopore peptide sequencing method that sensitively detects PTMs at the single-molecule level 3 . By translocating PTM variants of the plant pentapeptide hormone phytosulfokine (PSK) through a nanopore, we here demonstrate accurate identification of sulfation and phosphorylation on the two tyrosine residues of PSK. Sulfation can be clearly detected and distinguished (>90%) from phosphorylation on the same residue. Moreover, the presence or absence of PTMs on the two close-by tyrosine residues can be accurately determined (>96% accuracy). Our findings demonstrate the extraordinary sensitivity of nanopore protein measurements, providing a new tool for identifying sulfation on peptide phytohormones and promising wider applications to identify protein PTMs.
Keyphrases
  • single molecule
  • plant growth
  • atomic force microscopy
  • living cells
  • single cell
  • amino acid
  • risk assessment
  • binding protein
  • solid state
  • protein kinase
  • high resolution
  • quantum dots
  • mass spectrometry
  • highly efficient